Development of national stressor-specific genus sensitivity values.

Effective water quality management is based on associations between at least two pieces of information: a stressor and a response. However, assessments are hindered by the lack of pre-developed stressor-response associations. To remedy this, I developed genus stressor-specific sensitivity values (SVs) for up to 704 genera to estimate a sensitive genera ratio (SGR) metric for as many as 34 common stream stressors. The SVs were estimated from a large, paired macroinvertebrate and environmental data set for the contiguous United States. Environmental variables measuring potential stressors were selected that were generally uncorrelated and usually had several thousand station observations. I calculated relative abundance weighted averages (WA) for each genus and environmental variable meeting data requirements in a calibration data set. Each environmental variable was split into 10 intervals along each stressor gradient. Genera were assigned an SV from 1 to 10 based on the interval consistent with the WA for each environmental parameter. Using the calibration derived SVs, SGRs were calculated for the calibration and a validation subsets. SGRs are the number of genera with SV ≤ 5 divided by the total number of genera in a sample. In general, as stress increased, the SGR (range: 0-1) decreased for many environmental variables, but for five environmental variables, the decrease was not consistent. The 95 % confidence intervals of the mean of the SGRs were greater for least disturbed stations compared to all other stations for 23 of the remaining 29 environmental variables. Regional performance of SGRs was evaluated by subdividing the calibration data set into West, Central, and East subsets and recalculating SVs. SGR mean absolute errors were smallest in the East and Central regions. These stressor-specific SVs expand the available tools for assessing stream biological impairments from commonly encountered environmental stressors.

Dense granule biogenesis, secretion, and function in Toxoplasma gondii.

Toxoplasma gondii is an obligate intracellular parasite and the causative agent of Toxoplasmosis. A key to understanding and treating the disease lies with determining how the parasite can survive and replicate within cells of its host. Proteins released from specialized secretory vesicles, named the dense granules (DGs), have diverse functions that are critical for adapting the intracellular environment, and are thus key to survival and pathogenicity. In this review, we describe the current understanding and outstanding questions regarding dense granule biogenesis, trafficking, and regulation of secretion. In addition, we provide an overview of dense granule protein ("GRA") function upon secretion, with a focus on proteins that have recently been identified.

Consideration of spatial and temporal scales in stream restorations and biotic monitoring to assess restoration outcomes: A literature review, Part 2.

Stream and river restoration practices have become common in many parts of the world. To answer the question whether such restoration measures improve freshwater biotic assemblages or functions over time, and if not, can general reasons be identified for such outcomes, we conducted a literature survey and review of studies in which different types of stream restorations were conducted and outcomes assessed. In the first paper, we reviewed studies of culvert restorations, acid mine drainage or industrial pollution restoration; and urban stream restoration projects. Here, we review studies of restoration via dam removal, changes in dam operation or fish passage structures; instream habitat modification; riparian restoration or woody material addition; channel restoration and multiple restoration measures and develop some general conclusions from these reviews. Biomonitoring in different studies detected improvements for some restoration measures; other studies found minimal or no statistically significant increases in biotic assemblage richness, abundances or functions. In some cases, untreated stressors may have influenced the outcomes of the restoration, but in many cases, there were mismatches in the temporal or spatial scale of the restoration measure undertaken and associated monitoring. For example, either biomonitoring to measure restoration effects was conducted over a too short a time period after restoration for effects to be observed, or the sources and stressors needing remediation occurred at a larger catchment scale than the restoration. Also, many restoration measures lack observations from unimpaired reference sites for use in predicting how much of a beneficial effect might be expected.

Consideration of spatial and temporal scales in stream restorations and biotic monitoring to assess restoration outcomes: A literature review, Part 1.

Stream and river restoration practices have become common in many parts of the world. We ask the question whether such restorations improve freshwater biotic assemblages or functions over time, and if not, can general reasons be identified for such outcomes. We conducted a literature survey and review of studies in which different types of stream restorations were conducted and outcomes reported. These restoration types included culvert restoration; acid mine restoration or industrial pollutant restoration; urban stream restoration; dam removal, changes in dam operation, or fish passage structures; instream habitat modification; riparian restoration or woody material addition; channel restoration and multiple restorations. The streams ranged from headwater streams to large rivers, and the regions included North America, Europe, Australia and New Zealand, and a small number of sites in Asia and Africa. In this part of the review, we describe the methods used for the review and present reviews for the first three types of stream restorations. For culvert restorations, the small sample size and variable study design and biotic responses limited generalizing about temporal and spatial scale effects for that restoration type. The complex and often lengthy time to restore streams from acid mine drainage and industrial pollutants often resulted in positive biotic responses, but restored sites had reduced responses compared to reference sites. Most urban stream restorations had minimal or mixed improvements in biotic responses, with one mismatch in spatial scale evidenced by hydraulic structures used in a restoration unable to withstand peak discharge.

Uptake of Sulfate from Ambient Water by Freshwater Animals.

To better understand how the sulfate (SO4 2-) anion may contribute to the adverse effects associated with elevated ionic strength or salinity in freshwaters, we measured the uptake and efflux of SO4 2- in four freshwater species: the fathead minnow (Pimephales promelas, Teleostei: Cyprinidae), paper pondshell (Utterbackia imbecillis, Bivalvia: Unionidae), red swamp crayfish (Procambarus clarkii, Crustacea: Cambaridae), and two-lined mayfly (Hexagenia bilineata, Insecta: Ephemeridae). Using δ( 34 S/ 32 S) stable isotope ratios and the concentrations of S and SO4 2-, we measured the SO4 2- influx rate (J in ), net flux (J net ), and efflux rate (Jout) during a 24 h exposure period. For all four species, the means of J in for SO4 2- were positive, and J in was significantly greater than 0 at both target SO4 2- concentrations in the fish and mollusk and at the lower SO4 2- concentration in the crayfish. The means of J out and J net were much more variable than those for J in , but several species by target SO4 2- concentration combinations for J out and J net , were negative, which suggests the net excretion of SO4 2- by the animals. The results of our experiments suggest a greater regulation of SO4 2- in freshwater animals than has been previously reported.

Using extirpation to evaluate ionic tolerance of freshwater fish.

Field data of fish occurrences and specific conductivity were used to estimate the tolerance of freshwater fish to elevated ion concentrations and to compare the differences between species- and genus-level analyses for individual effects. We derived extirpation concentrations at the 95th percentile (XC95) of a weighted cumulative frequency distribution for fish species inhabiting streams of the central and southern Appalachians by customizing methods used previously with macroinvertebrate genera. Weighting factors were calculated based on the number of sites in basins where each species occurred, reducing overweighting observations of species restricted to fewer basins. Comparing the species- and genus-level fish XC95 values, XC95s for fish genera were near the XC95s for the most salt-tolerant species in the genus. Therefore, a genus-level effect threshold is not reliably predictive of species-level extirpation, unless the genus is monospecific in the assessed assemblage. Of the 101 fish species XC95 values, 5% were <509 and 10% were <565 µS/cm. The lowest XC95 for a species was 322 µS/cm, which is >300 µS/cm, the exposure estimated to extirpate 5% of macroinvertebrate genera in the central Appalachians. Above 509 µS/cm, 41 of the 101 species are expected to decline in occurrence. Environ Toxicol Chem 2018;37:871-883. Published 2017 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America.

Toxicological perspective on the osmoregulation and ionoregulation physiology of major ions by freshwater animals: Teleost fish, crustacea, aquatic insects, and Mollusca.

Anthropogenic sources increase freshwater salinity and produce differences in constituent ions compared with natural waters. Moreover, ions differ in physiological roles and concentrations in intracellular and extracellular fluids. Four freshwater taxa groups are compared, to investigate similarities and differences in ion transport processes and what ion transport mechanisms suggest about the toxicity of these or other ions in freshwater. Although differences exist, many ion transporters are functionally similar and may belong to evolutionarily conserved protein families. For example, the Na+ /H+ -exchanger in teleost fish differs from the H+ /2Na+ (or Ca2+ )-exchanger in crustaceans. In osmoregulation, Na+ and Cl- predominate. Stenohaline freshwater animals hyperregulate until they are no longer able to maintain hypertonic extracellular Na+ and Cl- concentrations with increasing salinity and become isotonic. Toxic effects of K+ are related to ionoregulation and volume regulation. The ionic balance between intracellular and extracellular fluids is maintained by Na+ /K+ -adenosine triphosphatase (ATPase), but details are lacking on apical K+ transporters. Elevated H+ affects the maintenance of internal Na+ by Na+ /H+ exchange; elevated HCO3- inhibits Cl- uptake. The uptake of Mg2+ occurs by the gills or intestine, but details are lacking on Mg2+ transporters. In unionid gills, SO42- is actively transported, but most epithelia are generally impermeant to SO42- . Transporters of Ca2+ maintain homeostasis of dissolved Ca2+ . More integration of physiology with toxicology is needed to fully understand freshwater ion effects. Environ Toxicol Chem 2017;36:576-600. Published 2016 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America.

Proof of concept for the use of macroinvertebrates as indicators of polychlorinated biphenyls (PCB) contamination in Lake Hartwell.

The US Environmental Protection Agency (USEPA) develops methods and tools for evaluating risk management strategies for sediments contaminated with polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs), and other legacy pollutants. Monitored natural recovery is a risk management alternative that relies on existing physical, chemical, and biological processes to contain, destroy, and/or reduce the bioavailability or toxicity of in-place contaminants. These naturally occurring processes are monitored to ensure that management and recovery are progressing as expected. One approach frequently used to evaluate the recovery of contaminated sediments and associated biota is the assessment of contaminant tissue levels, or body burden concentrations, in top trophic level fish. In the present study, aquatic invertebrates were examined as an indicator of recent exposure to PCBs. The approach aimed to determine whether invertebrates collected using artificial substrates (i.e., Hester-Dendy samplers) could be used to discriminate among contaminated sites through the analyses of PCBs in whole homogenates of macroinvertebrates. Macroinvertebrates were sorted, preserved, and analyzed for total PCBs (t-PCBs), by summing 107 PCB congeners. Macroinvertebrate body burden concentrations showed similar trends to sediment t-PCB concentrations at the sites sampled. The results indicate that macroinvertebrates can be used to assess sediment contamination among sites that have different PCB contamination levels.

The effects of mountaintop mines and valley fills on the physicochemical quality of stream ecosystems in the central Appalachians: a review.

This review assesses the state of the science on the effects of mountaintop mines and valley fills (MTM-VF) on the physicochemical characteristics of streams in the central Appalachian coalfields of West Virginia, Kentucky, Virginia and Tennessee, USA. We focus on the impacts of mountaintop removal coal mining, which involves removing all - or some portion - of the top of a mountain or ridge to expose and mine one or more coal seams. Excess overburden is disposed in constructed fills in small valleys adjacent to the mining site. MTM-VF leachate persistently increases the downstream concentrations of major ions. Conductivity is a coarse measure of these ions, which are dominated by a distinct mixture of SO(4)(2-), HCO(3)(-), Ca(2+) and Mg(2+), that reflects their source, the oxidation of pyrite to form acid followed by neutralization of the acidity by carbonate minerals within the valley fills. This results in neutral to alkaline pHs, a range at which many metals are relatively insoluble. Other compounds within coal or overburden are solubilized and occur at elevated albeit lower concentrations, including K(+), Na(+), Cl(-), Se and Mn. In terms of physical characteristics, the valley fills act like headwater aquifers, baseflows increase in streams below valley fills and water temperatures exhibit reduced seasonal variation. Peak discharges may be increased in response to intense precipitation events, because of compaction of base surfaces of the MTM-VF areas, but newer approaches to reclamation reduce this compaction and may ameliorate these peak flows. Although the sedimentation pond is intended to capture fine particles that wash downstream from the valley fill, some studies found increased fine sediments in streams downstream from valley fills. However, a proportion of these fines may be eroded from stream banks rather than the valley fills. This is probably a result of the alterations in stream flows.

Influences of spatial scale and soil permeability on relationships between land cover and baseflow stream nutrient concentrations.

The Little Miami River (LMR) basin, dominated by agriculture, contains two geologically-distinct regions; a glaciated northern till plain with soils three times more permeable than a southern, pre-Wisconsinan drift plain. The influences of two landscape measures, percent row crop cover (%RCC, computed at three spatial scales), and soil permeability (PERM), on baseflow nutrient concentrations were modeled using linear regressions. Quarterly water samples collected for four years were analyzed for nitrate-N (NN), Kjeldahl-N (KN), total-N (TN), and total-P (TP). In till plain streams (n = 17), NN concentrations were 8.5-times greater than drift plain streams (n = 18), but KN and TP were 20-40% lower at comparable %RCC. These differences resulted in TN/TP molar ratios >80 in till plain streams, but <6 in drift plain streams. For till plain steams regression models based on %RCC accounted for 79% of the variance in NN concentrations but only 27% in drift plain streams. However, regressions on %RCC accounted for 68-75% of the KN and TP concentration variance in the drift plain streams but essentially none in the till plain. Catchment PERM influenced the regional NN/KN ratios which were 10-fold higher in the drift plain streams. For both till and drift streams the catchment scale %RCC gave the best predictions of NN, a water soluble anion, but the smaller spatial scales produced better models for insoluble nutrient species (e.g., KN and TP). Published literature on Ohio streams indicates that these inter-regional differences in nutrient ratios have potential implications for aquatic biota in the receiving streams.

Relationships among exceedences of metals criteria, the results of ambient bioassays, and community metrics in mining-impacted streams.

If bioassessments are to help diagnose the specific environmental stressors affecting streams, a better understanding is needed of the relationships between community metrics and ambient criteria or ambient bioassays. However, this relationship is not simple, because metrics assess responses at the community level of biological organization, while ambient criteria and ambient bioassays assess or are based on responses at the individual level. For metals, the relationship is further complicated by the influence of other chemical variables, such as hardness, on their bioavailability and toxicity. In 1993 and 1994, U.S. Environmental Protection Agency (U.S. EPA) conducted a Regional Environmental Monitoring and Assessment Program (REMAP) survey on wadeable streams in Colorado's (USA) Southern Rockies Ecoregion. In this ecoregion, mining over the past century has resulted in metals contamination of streams. The surveys collected data on fish and macroinvertebrate assemblages, physical habitat, and sediment and water chemistry and toxicity. These data provide a framework for assessing diagnostic community metrics for specific environmental stressors. We characterized streams as metals-affected based on exceedence of hardness-adjusted criteria for cadmium, copper, lead, and zinc in water; on water toxicity tests (48-h Pimephales promelas and Ceriodaphnia dubia survival); on exceedence of sediment threshold effect levels (TELs); or on sediment toxicity tests (7-d Hyalella azteca survival and growth). Macroinvertebrate and fish metrics were compared among affected and unaffected sites to identify metrics sensitive to metals. Several macroinvertebrate metrics, particularly richness metrics, were less in affected streams, while other metrics were not. This is a function of the sensitivity of the individual metrics to metals effects. Fish metrics were less sensitive to metals because of the low diversity of fish in these streams.

Development and evaluation of a Macroinvertebrate Biotic Integrity Index (MBII) for regionally assessing Mid-Atlantic Highlands Streams.

The Macroinvertebrate Biotic Integrity Index (MBII) was developed from data collected at 574 wadeable stream reaches in the Mid-Atlantic Highlands region (MAHR) by the U.S. Environmental Protection Agency's (USEPA) Environmental Monitoring and Assessment Program (EMAP). Over 100 candidate metrics were evaluated for range, precision, responsiveness to various disturbances, relationship to catchment area, and redundancy. Seven metrics were selected, representing taxa richness (Ephemeroptera richness, Plecoptera richness, Trichoptera richness), assemblage composition (percent non-insect individuals, percent 5 dominant taxa), pollution tolerance [Macroinvertebrate Tolerance Index (MTI)], and one functional feeding group (collector-filterer richness). We scored metrics and summed them, then ranked the resulting index through use of independently evaluated reference stream reaches. Although sites were classified into lowland and upland ecoregional groups, we did not need to develop separate scoring criteria for each ecoregional group. We were able to use the same metrics for pool and riffle composite samples, but we had to score them differently. Using the EMAP probability design, we inferred the results, with known confidence bounds, to the 167,797 kilometers of wadeable streams in the Mid-Atlantic Highlands. We classified 17% of the target stream length in the MAHR as good, 57% as fair, and 26% as poor. Pool-dominated reaches were relatively rare in the MAHR, and the usefulness of the MBII was more difficult to assess in these reaches. The process used for developing the MBII is widely applicable and resulted in an index effective in evaluating region-wide conditions and distinguishing good and impaired reaches among both upland and lowland streams dominated by riffle habitat.

Analysis of macroinvertebrate assemblages in relation to environmental gradients among lotic habitats of California's Central Valley.

We assessed relationships between environmental characteristics and macroinvertebrate assemblages in lotic habitats of California's Central Valley with community metric and multivariate statistical approaches. Using canonical ordination analyses, we contrasted results when assemblage structure was assessed with macroinvertebrate metrics, as suggested for use in indices of biotic integrity, or with genera abundances. Our objectives were to identify metrics or taxa diagnostic of lotic environmental stressors and compare the capacity of these approaches to detect stressors in order to suggest how they might be used to diagnose stressors. For macroinvertebrate metrics, redundancy analysis (RDA) extracted three axes correlated with channel morphology and substrates. For genera abundances, canonical correspondence analysis (CCA) extracted two axes correlated with soluble salts and with channel morphology and substrates but did not separate these gradients onto different axes. Cluster analyses identified five RDA and five CCA site groups, which exhibited differences for environmental variables, metrics, or genera abundances, and agreement between the analyses in partitioning of sites was greater than if sites were partitioned randomly. These approaches differ in their ability to detect environmental stressors, because they measure different aspects of assemblages and would be complementary in design of new metrics diagnostic of stressors.

Leaf litter processing and exoenzyme production on leaves in streams of different pH.

We examined microbial colonization, exoenzyme activity, and processing of leaves of yellow poplar (Liriodendron tulipifera), red maple (Acer rubrum), and white oak (Quercus alba) in three streams on the Allegheny Plateau of West Virginia, United States. Leaf packs were placed in streams that varied in their underlying bedrock geology, and therefore in their sensitivity to the high level of acidic precipitation that occurs in this region. The mean pH of the streams was 4.3 in the South Fork of Red Run (SFR), 6.2 in Wilson Hollow Run (WHR), and 7.7 in the North Fork of Hickman Slide Run (HSR). Through time, the patterns of microbial biomass and exoenzyme activity were generally similar among leaf species, but the magnitude of microbial biomass and exoenzyme activity differed among leaf species. Pectinase activity was greatest in HSR, the most alkaline stream, whereas the activity of exocellulase and xylanase was greatest in WHR and SFR, the intermediate and acidic streams. This variation in the activity of different exoenzymes was consistent with published pH optima for these exoenzymes. Variation in processing rates, both among leaf species and among streams, seems to be related to the level of microbial exoenzyme activity on the leaf detritus.